AT1G65140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.958 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin carboxyl-terminal hydrolase family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin carboxyl-terminal hydrolase family protein; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT1G65160.1); Has 143 Blast hits to 143 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:24201620..24203226 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 36501.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.25 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||
| Length | 317 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLSEVKEME KDEEIDSDLS DSDTEEPEEK ILDATSLSAL DMILKSLWNI SVFVSNLSMD YVQEANQSLT DNESVPLQDI LRIFMLNNLS LTHPLEANGV 101: SKLFLNILEL IPRWNYHFEV NEVAKTICIR CKTDMAYSGE TSYGIIINAN SLRVYKSAFK EFTFENIIKA SMINVKMLCD KEGCGKRNYV DTMISNLPSA 201: FIVALQWENN ETEKEIFDTA SVLATEIDIS AIYRYVGDSA FTKYRLVSMV WSHGNLYNCV AYENNRWVRH FCSEIEVIGD WDGVLRIFRE LHIRPEILFF 301: ENAILKDQMF SEQGSED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)