AT1G65130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin carboxyl-terminal hydrolase-related protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT1G65200.1); Has 327 Blast hits to 290 proteins in 68 species: Archae - 0; Bacteria - 15; Metazoa - 27; Fungi - 22; Plants - 225; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:24196472..24201022 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 123899.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.66 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||
| Length | 1079 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKPPSLEDCR LDESYFAGGD HIKAMVIIED SIFKQGKGND LLGLLHFQQG SIFRAQARRT ENSDVKFTFL LGSVECFAES EGFSSFTALS LFEMGQHLGS 0101: SMYYKKSVEK AKEYLSVLAE LDEYGPKEVK SQKDVERIIE DAESRIAGGK SLVASPIVRS EPKAKESKKN PDSKLRSFWR GLDDEFKRNF LKMEITKLIS 0201: FVEAMYGKEG RDALDQVLTF ARENRKWRFW MCRTCSKKFS SPEECKNHLG QEHAAEFKPS STKDMPQTVT KVWGHKISVG GWDPVDAAAA VEMIKNRLQD 0301: VKAFAYENGW SKDWPLAIDE ERSKLLKEIK LLLVSFWELK ILSCSIRDWM MQFPVKHLAQ FEVSEHTLTT ECRLVETPQS ICFLEFRELN QILHFLRAIK 0401: GERDDGKNLV CKAVDSFWDG TRVKEKIDFD SQFSFLLLDK RLLKCKLTRF DNEGTVNVFD PNDYYANAQV HGDDILSWLA DYSLGDEIFR FPKPIRTHNI 0501: DIWVAVLRAV QFTCRTLRTK YEKKLRMICY DAALIDANNL CIREDERRRN IPEDQWTLYA SLLCDKCEEN IRRHAGDSLT TKLSLCAVQD VLGGASQPTF 0601: DFTDLVDCRN LINGHKHISD DIVLKSINLL KSVVTYKVPL VDSKILLVEN SRISLLKDLV SLSVFDYRSY ILQPVKLYLE EELEDAAPPE LLSEKKQEKA 0701: KKSGSKKRNH KSTKRTSASM SSHLDQDVEQ AKEDSMELED DTKGEKSLFE ISSNTNNQEE ATKGDSNMQS MPREDLETVN GKAATRYNSA LDMMLKSLCN 0801: IKVLKEDLVN NRKPFSENQV PCALRDFFSA FVSEKIKEEE LYGHLLSNLL DSLEELHSLS SNAAEVLVAI LEFCHCWKSP ESESLVTRLF TLEEYERMSC 0901: RKCRRKPNYP EQSSYGIVMA ADSIRDLECA LGNIMFEDTL KVIRMNNEMI CDVGTGGCGE RNLVHHTISR CPPIFTIVLE WEKNETEIEI YETTNALHWE 1001: IDISRLYEGL EPNTNYRLVS MIGCVEEGEY ICMAYEKNRW VSRRHEASAE EVVGNWKSVV KICGERKIRS EVLFYEAVQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)