AT1G65120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.806 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin carboxyl-terminal hydrolase-related protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT1G65110.1); Has 468 Blast hits to 425 proteins in 93 species: Archae - 0; Bacteria - 32; Metazoa - 49; Fungi - 38; Plants - 218; Viruses - 8; Other Eukaryotes - 123 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:24191721..24195907 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 128093.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.55 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||
| Length | 1121 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAPLLPLLVE DPEEAKIQKL VHGYFAEGDY IKALEVIEDS ISTRGKEKVP AMVHYLQGCF FYEQGTKTEN SDMKFPFLLA SVECFTEDCG VHAYSAIALL 0101: ELGKLIGSAS FYKKALNIAK EGLSFIASFG GLNLSEENTK SSLENVVLVA ESMIPKLQGS VRSDSDTAAT EAMIEAADSM VLLQKMSEPK LRESKNIRDS 0201: IRSDLETAAG KRLRSYWASM DVESKRNFMK VSIAKLTAYV ERLYGRVGLD ALEQVLDSAR INRKWKFWMC RSCSQKFYYP KKFRSHLEQE HAAKFKPSTT 0301: KHMAQRVDEV WAGMISVAGW EPVDVVAAVE MIKTQLESVK EFVYENGWSK NWPLAVDEER SKLLKELQSL LLLFQERKIL SCSIRDWMMQ LTVKHLAQLE 0401: ISEHTLSSKC RLVETPQSIC FLECHELNQI LDLLKRINCE RVDGTELVSN ATDSLCGRLR VKEKIEFDHE FSFMLLDKRL LRGKIASFDD EGIIDVCDHN 0501: VHYTKTHPQG DDTITWLLDY PLIDESFEFP RSIRAHNLEI CVAVLRAIHF TCATLGTKYA KKLQILNYDA ALIDAKNLCI LEDERRKNVP EDQWNTYASL 0601: LCDKCEERLV IDAGDSHTTK LCLCAVRDVL EKASHPTFEF SDLEDCMTLI HGHKNLNDDT VLKSIDLLKS VVTNKVPVAD SKILLIENSR TNLLNDLVKL 0701: SVFDYRSYIL HLLKRYQRDE LDEIVDMDAK TKLAAAQAEH LSEEKQEKGK KSGSNKKKNR SNKRTSASMS KDDVHESSVN LEPKVTPPSP KSTEEDSMEP 0801: EDTLSSERGR LEISSNTKSQ DETAKDMENM PGEDLLSENL ESAHKKVTRY NSALDMTLKA LLNIKVLQED LVHNRQLFHG NLEEQVPCAL KDFFSAVVSE 0901: QIKEDELYSY LLSNLLASLE EVHSLSSDAD EVVVTILEFL HWWKSPEKES LVTRLFTLEE YERMRCTKCR RNPNYPEQSS YGIVMAANSI RNLKCAFGNM 1001: KFEEILTVIR MEDEMICDVK TGGCGKTNFV HHVLSRCPPI FTIVLEWEKN ETETEISETA KALAWEIDIS RLYEGLEEPN TNYRLVSMVY LKQGHKHFCY 1101: LFFCISSLLQ SRNMKNADWL W |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)