AT1G65110.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.984 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Ubiquitin carboxyl-terminal hydrolase-related protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT1G65120.2); Has 326 Blast hits to 281 proteins in 54 species: Archae - 0; Bacteria - 4; Metazoa - 46; Fungi - 7; Plants - 239; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:24183959..24188330 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 126450.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.30 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||
| Length | 1094 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKSSPRKLAQ RYYEQGDHIK ALEVIEDSIL KIGGKLKLPS DLCFLQGHIF MALARKTENS DLKFAFFLAS VECYLEDYML QAFAAVSLFH LGERLGSTLY 0101: YKKAVKIAKR SLSVMSFDPS KSDQQKTKRT LEDIVETTGD SHTIAAKRLR LYWAGMSAER KRNFMKVSTV ELRSYVERVY GREGLDALEQ VLDSARINRK 0201: WKFWMCRTCS QTFFYPKKFK NHLEQVHDAK YKPVREDLAQ SIDDVWAGMI SVADWEPVDA LAAAEMIKNR LEFVKEFVYV NGWSKDWPLA ADEERRKLLK 0301: EIRLLLVLLL ERKILSCSIR DWMMRFPVQH LIAQFEVSEN TITTECRLVE TPQSICFLEC DELNQILDLL KRIKCERDDG TELISMATDS LWRRTQVKEK 0401: IDIDHVCSLM LLDKRLLRGK IASFDDEGSI DVCDHNVHYA KTNPQGDDII TWLLDDYSLI DKSFGFPRSI GAHNLDIRMA VLRAIHFTRR TLATRYAKKW 0501: QILCYDECLN DARNLCIQED ESRMNVPEDQ RNIYASLLCD SCEEQLTIDT EDPLFTELYL CAVRDVLEGI SHPTFDFTNA EDCLELIHGL KNISDDIVLK 0601: SIDLLKSVVT SKVLLADSKI LLVENSRIHL LNDLIRLSVF DYRSYILPLL KRFLREELEG IVDMDAKAKL AALEEELLTE EKKRKEKKSG PKKKKHRSNK 0701: RTSASKSSHL DQDDPQESSI NLEPGVSLLK MVDEDSIEPE ERGRQETSSN TNNHEEAIKD LKNMPTKDSL SEDATRYRSA LDMTLKALLN IKVLQEDLVH 0801: NRQPFHGNLE EQVPYALQNL FSAIVSEQIA EEGLYSYLLS NLLASLEGVH SMSSDAADVV VAILEFFHCW KSPERESLVT RLFTLAEYER MSCKKCKRKP 0901: NYPEQSSYGI VMAANSIRNL KCAFGNIKFE DILKMGRMKD GMICDVKTGG CGDINFVHHT ISRCPPIFTI VLEWVKNETE KDISETTKAL DWEIDISRVY 1001: EGLEESNIKY RLVSMIGCVV EGEYICMAYK KNRWVSLRHE ALAEEVVGNW NNVVRFCGER KVRPEILFYE AFQWPNKWQK LISRKYQYEN LAFM |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)