AT1G65010.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF827) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Putative role in flower development. Comparison of SALK_061426C to Columbia wild type in normal lighting and under low light of 33 micromoles per meter-squared per second resulted in a trend toward earlier bolting in the mutant under low light (P=0.055) (Ann Stapleton and Patrick Pridgen, 2009, personal communication). | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
INVOLVED IN: flower development; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT4G27595.1); Has 334261 Blast hits to 142886 proteins in 4027 species: Archae - 5350; Bacteria - 88202; Metazoa - 120091; Fungi - 23018; Plants - 18141; Viruses - 1798; Other Eukaryotes - 77661 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:24149543..24154024 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 152710.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.61 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.90 | ||||||||||||||||||||||||||||||||||||
| Length | 1345 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASRTKTGLM ETPRSKPSPP PPRLSKLSAS KSDSNSASPV PNTRLSLDRS PPTVNSKPTP DRRPSRIPTP EKVHSRLVKG TELQTQLNQI QEDLKKADEQ 0101: IELLKKDKAK AIDDLKESEK LVEEANEKLK EALAAQKRAE ESFEVEKFRA VELEQAGLEA VQKKDVTSKN ELESIRSQHA LDISALLSTT EELQRVKHEL 0201: SMTADAKNKA LSHAEEATKI AEIHAEKAEI LASELGRLKA LLGSKEEKEA IEGNEIVSKL KSEIELLRGE LEKVSILESS LKEQEGLVEQ LKVDLEAAKM 0301: AESCTNSSVE EWKNKVHELE KEVEESNRSK SSASESMESV MKQLAELNHV LHETKSDNAA QKEKIELLEK TIEAQRTDLE EYGRQVCIAK EEASKLENLV 0401: ESIKSELEIS QEEKTRALDN EKAATSNIQN LLDQRTELSI ELERCKVEEE KSKKDMESLT LALQEASTES SEAKATLLVC QEELKNCESQ VDSLKLASKE 0501: TNEKYEKMLE DARNEIDSLK STVDSIQNEF ENSKAGWEQK ELHLMGCVKK SEEENSSSQE EVSRLVNLLK ESEEDACARK EEEASLKNNL KVAEGEVKYL 0601: QETLGEAKAE SMKLKESLLD KEEDLKNVTA EISSLREWEG SVLEKIEELS KVKESLVDKE TKLQSITQEA EELKGREAAH MKQIEELSTA NASLVDEATK 0701: LQSIVQESED LKEKEAGYLK KIEELSVANE SLADNVTDLQ SIVQESKDLK EREVAYLKKI EELSVANESL VDKETKLQHI DQEAEELRGR EASHLKKIEE 0801: LSKENENLVD NVANMQNIAE ESKDLREREV AYLKKIDELS TANGTLADNV TNLQNISEEN KELRERETTL LKKAEELSEL NESLVDKASK LQTVVQENEE 0901: LRERETAYLK KIEELSKLHE ILSDQETKLQ ISNHEKEELK ERETAYLKKI EELSKVQEDL LNKENELHGM VVEIEDLRSK DSLAQKKIEE LSNFNASLLI 1001: KENELQAVVC ENEELKSKQV STLKTIDELS DLKQSLIHKE KELQAAIVEN EKLKAEAALS LQRIEELTNL KQTLIDKQNE LQGVFHENEE LKAKEASSLK 1101: KIDELLHLEQ SWLEKESEFQ RVTQENLELK TQDALAAKKI EELSKLKESL LEKETELKCR EAAALEKMEE PSKHGNSELN SIGKDYDLVQ FSEVNGASNG 1201: DEKTKTDHYQ QRSREHMIQE SPMEAIDKHL MGERAAIHKV AHRVEGERNV EKESEFKMWD SYKIEKSEVS PERETELDSV EEEVDSKAES SENMDQYSNG 1301: FSLTDHTEDS GNLLLKEQHM KKKKPLLRKF GNLLKKKSTS SSSQK |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)