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AT1G64780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ammonium transporter 1;2
Curator
Summary (TAIR10)
encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root.
Computational
Description (TAIR10)
ammonium transporter 1;2 (AMT1;2); CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;1 (TAIR:AT4G13510.1); Has 11676 Blast hits to 11662 proteins in 2073 species: Archae - 224; Bacteria - 4692; Metazoa - 520; Fungi - 427; Plants - 507; Viruses - 0; Other Eukaryotes - 5306 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2534-MONOMERBioGrid:28007eggNOG:COG0004eggNOG:KOG0682
EMBL:AC006193EMBL:AF083036EMBL:AF110771EMBL:AY062571
EMBL:AY093374EMBL:CP002684EnsemblPlants:AT1G64780EnsemblPlants:AT1G64780.1
entrez:842786Gene3D:1.10.3430.10GeneID:842786Genevisible:Q9ZPJ8
GO:GO:0005886GO:GO:0005887GO:GO:0006995GO:GO:0008519
GO:GO:0009624GO:GO:0015696GO:GO:0015843GO:GO:0019740
GO:GO:0072488Gramene:AT1G64780.1hmmpanther:PTHR11730hmmpanther:PTHR11730:SF39
HOGENOM:HOG000017735InParanoid:Q9ZPJ8InterPro:IPR001905InterPro:IPR018047
InterPro:IPR024041InterPro:IPR029020iPTMnet:Q9ZPJ8KEGG:ath:AT1G64780
KO:K03320OMA:GFAYAYNPANTHER:PTHR11730PaxDb:Q9ZPJ8
Pfam:PF00909Pfam:Q9ZPJ8PhylomeDB:Q9ZPJ8PIR:A96671
PRIDE:Q9ZPJ8PRO:PR:Q9ZPJ8PROSITE:PS01219ProteinModelPortal:Q9ZPJ8
Proteomes:UP000006548RefSeq:NP_176658.1scanprosite:PS01219SMR:Q9ZPJ8
STRING:3702.AT1G64780.1SUPFAM:0044218SUPFAM:SSF111352TAIR:AT1G64780
tair10-symbols:AMT1;2tair10-symbols:ATAMT1;2TIGRfam:TIGR00836TIGRFAMs:TIGR00836
TMHMM:TMhelixUniGene:At.14824UniProt:Q9ZPJ8
Coordinates (TAIR10) chr1:-:24061021..24062565
Molecular Weight (calculated) 55016.80 Da
IEP (calculated) 7.49
GRAVY (calculated) 0.35
Length 514 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTATTTCSA VDLSALLSSS SNSTSSLAAA TFLCSQISNI SNKLSDTTYA VDNTYLLFSA YLVFAMQLGF AMLCAGSVRA KNTMNIMLTN VLDAAAGAIS
101: YYLFGFAFAF GTPSNGFIGR HHSFFALSSY PERPGSDFSF FLYQWAFAIA AAGITSGSIA ERTQFVAYLI YSTFLTGFVY PTVSHWFWSS DGWASASRSD
201: NNLLFGSGAI DFAGSGVVHM VGGIAGLCGA LVEGPRIGRF DRSGRSVALR GHSASLVVLG TFLLWFGWYG FNPGSFLTIL KGYDKSRPYY GQWSAVGRTA
301: VTTTLSGCTA ALTTLFSKRL LAGHWNVIDV CNGLLGGFAA ITSGCAVVEP WAAIVCGFVA SWVLIGFNLL AKKLKYDDPL EAAQLHGGCG AWGLIFTGLF
401: ARKEYVNEIY SGDRPYGLFM GGGGKLLAAQ IVQIIVIVGW VTVTMGPLFY GLHKMNLLRI SAEDEMAGMD MTRHGGFAYA YNDEDDVSTK PWGHFAGRVE
501: PTSRSSTPTP TLTV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)