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AT1G64583.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G64580.1).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC009519EMBL:CP002684
EnsemblPlants:AT1G64583EnsemblPlants:AT1G64583.1entrez:10723135Gene3D:1.25.40.10
GeneID:10723135GO:GO:0005739Gramene:AT1G64583.1hmmpanther:PTHR24015
HOGENOM:HOG000015176InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT1G64583
OMA:ARESFAYPaxDb:P0C7R3Pfam:P0C7R3Pfam:PF12854
Pfam:PF13041Pfscan:PS51375PIR:C96669PRO:PR:P0C7R3
PROSITE:PS51375ProteinModelPortal:P0C7R3Proteomes:UP000006548RefSeq:NP_001185309.1
SMR:P0C7R3STRING:3702.AT1G64583.1SUPFAM:SSF48452SUPFAM:SSF81901
TAIR:AT1G64583TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.75511
UniProt:P0C7R3
Coordinates (TAIR10) chr1:-:23987202..23988740
Molecular Weight (calculated) 57892.90 Da
IEP (calculated) 7.56
GRAVY (calculated) 0.07
Length 512 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRLIVTGIA TSTAKGFRRV VNPNLLGGGA AARAFSDYRE KLRTGFLHSI RFEDAFALFF EMVHSQPLPS IVDFTRLLTA TANLRRYETV IYFSQKMELY
101: GISHDLYSFT ILIHCFCRCS RLSFALSVLG KMMKLGYEPS IVTFGSLLHG FCLVNRIGDA FSLVILMVKS GYEPNVVVYN TLIDGLCKNG ELNIALELLN
201: EMEKKGLGAD VVTYNTLLTG LCYSGRWSDA ARMLRDMMKR SINPDVVTFT ALIDVFVKQG NLDEAQELYK EMIQSSVDPN NVTYNSIING LCMHGRLYDA
301: KKTFDLMASK GCFPNVVTYN TLISGFCKFR MVDEGMKLFQ RMSCEGFNAD IFTYNTLIHG YCQVGKLRVA LDIFCWMVSR RVTPDIITHC ILLHGLCVNG
401: EIESALVKFD DMRESEKYIG IVAYNIMIHG LCKADKVEKA WELFCRLPVE GVKPDARTYT IMILGLCKNG PRREADELIR RMKEEGIICQ MNAEDDHLEE
501: HSSSNKEISL VS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)