AT1G64540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.652 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box/FBD-like domains containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box/FBD-like domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G35995.2); Has 1519 Blast hits to 1491 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1519; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:23966909..23968425 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50025.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.37 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||
| Length | 444 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNPREFISNL PDEILGKILS LLPTKLGVST SVLSKRWRNL ILLVDNFDLE DSSTSGFSAF LEQTVARLNT CPIKRLSLNG RHYRFSSADS WISTAFERGC 101: LELHLQSQYL DTGILSSNTL VKLTLSDQIY LQGLVPHDGT VFFPALKTLS LGAVVADRDV YESLISGCPV LDELSIRDGC DDPPTWKKSV VNKSVKRLTV 201: SFHHPMSAWA YEDNVWFKTQ SLVFLDYSAF VSQGYTIVDR MDSLVEARLD LRLWVSTDSY DSDYEDKDFD VYRPYDVFGD VTSLVSGIRK VKTLHLSPDS 301: LEAFFFCCNH MPVFNNLRNL SLESDEEKGW QALPLLLNNS LNLHTLSIKG LVHRVTSRCG DACACISERK TGMCCLSACR IKVLEITGYG GSFIELKQMR 401: HFLGKLQCLE TVRIGVERDG NNEHLRANLS SLHRASSECN IQFI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)