AT1G64470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.940 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin-like superfamily protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: phosphoinositide 4-kinase gamma 4 (TAIR:AT2G46500.2); Has 8683 Blast hits to 3845 proteins in 607 species: Archae - 0; Bacteria - 8; Metazoa - 3681; Fungi - 1028; Plants - 2383; Viruses - 97; Other Eukaryotes - 1486 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:23944785..23945426 | ||||||||
| Molecular Weight (calculated) | 23558.70 Da | ||||||||
| IEP (calculated) | 9.67 | ||||||||
| GRAVY (calculated) | -0.08 | ||||||||
| Length | 213 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MSVADVALSP IHRGSAFAVG GFGQSTTTHY SVKSVLVFLS VSGSTMPMLI LESDSIAEVK LRIQTCNGFR VRRQKLVFSG RELARNASRV KDYGVTGGSV 101: LHLVLKLYDP LLVTVITTCG KVFQFHVDRR RNVGYLKKRI SKEGKGFPEV DDQEILFKGE KLDDNRIIDG ICKDGNSVIH LLVKKSVEDT VKREEDTATG 201: KDSLLEPLFL TPM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)