AT1G64310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (plastidal marker)
onion epidermal cell layer (mitochondrial marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 36015 Blast hits to 13020 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 49; Plants - 35536; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:23866053..23867711 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61403.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.26 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.20 | ||||||||||||||||||||||||||||||||||||||||
| Length | 552 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASQTQLRLI IYEFTRKIQT RLNTQKLHSF VTKSKLARDP YFATQLARFY ALNDDLISAR KLFDVFPERS VFLWNSIIRA YAKAHQFTTV LSLFSQILRS 101: DTRPDNFTYA CLARGFSESF DTKGLRCIHG IAIVSGLGFD QICGSAIVKA YSKAGLIVEA SKLFCSIPDP DLALWNVMIL GYGCCGFWDK GINLFNLMQH 201: RGHQPNCYTM VALTSGLIDP SLLLVAWSVH AFCLKINLDS HSYVGCALVN MYSRCMCIAS ACSVFNSISE PDLVACSSLI TGYSRCGNHK EALHLFAELR 301: MSGKKPDCVL VAIVLGSCAE LSDSVSGKEV HSYVIRLGLE LDIKVCSALI DMYSKCGLLK CAMSLFAGIP EKNIVSFNSL ILGLGLHGFA STAFEKFTEI 401: LEMGLIPDEI TFSALLCTCC HSGLLNKGQE IFERMKSEFG IEPQTEHYVY MVKLMGMAGK LEEAFEFVMS LQKPIDSGIL GALLSCCEVH ENTHLAEVVA 501: ENIHKNGEER RSVYKVMLSN VYARYGRWDE VERLRDGISE SYGGKLPGIS WF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)