AT1G64260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.621 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MuDR family transposase | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MuDR family transposase; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), Transposase, MuDR, plant (InterPro:IPR004332); BEST Arabidopsis thaliana protein match is: MuDR family transposase (TAIR:AT1G64255.1); Has 1329 Blast hits to 1275 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1325; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:23847756..23849915 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 83219.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.51 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||
| Length | 719 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIETVREKV MVLCHLNGYI KYGADGVYYE GSILKKITIM RKTALSRLLD RLYQLFGLDK QKSEFKIFGK YPVDVSPDLF TYVHFPVLND SSLETMLEVP 101: RNHPSVNNLE FYLEAQPTSD AVVVPVTCSS PLESPDSSSK RQRITQQEIV DNNSGSAGIL VKVVNSGALK PCLLPRLWID DDHDMHLGLC FKDRDELKKA 201: VDWWCIRRRR NCIVRETEKE MYTFECVRWK CKWSLRAARM EEHGLVEITK YTGPHTCSHE YPNDFESEFA ADEIERVVRI QPTLSIAELK KWWKEKTGYE 301: LQTSKMRDGK LEVIKRVFGD EDQSFRVMPK LISAFHSSNG LLVDWQYDLF PNPDFASFRG VFWSFSQSIE GFQHCRPLIV VDTKSLNGKY QLKLMIASGV 401: DAANKFFPLA FAVTKEVSTD SWRWFFTKIR EKVTQRKDLC LISSPLRDIV AVVNEPGSLW QEPWAHHKFC LNHLRSQFLG VFRDYNLESL VEQAGSTNQK 501: EEFDSYMNDI KEKNPEAWKW LDQIPRHKWA LAHDSGLRYG IIEIDREALF AVCRGFPYCT VAMTGGVMLM FDELRSSFDK SLSSIYSSLN RGVVYTEPFM 601: DKLEEFMTDS IPYVITQLER DSFKVSESSE KEEWIVQLNV STCTCRKFQS YKFPCLHALA VFEKLKINPL QYVDECYTVE QYCKTYAATF SPVPDVAAWP 701: EDCRVPTLFP PSQQLSPNT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)