AT1G64110.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.524 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G28000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:23796887..23801255 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92369.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.82 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||
| Length | 827 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSKQMLLSA LGVGVGVGVG LGLASGQAVG KWAGGNSSSN NAVTADKMEK EILRQVVDGR ESKITFDEFP YYLSEQTRVL LTSAAYVHLK HFDASKYTRN 101: LSPASRAILL SGPAELYQQM LAKALAHFFD AKLLLLDVND FALKIQSKYG SGNTESSSFK RSPSESALEQ LSGLFSSFSI LPQREESKAG GTLRRQSSGV 201: DIKSSSMEGS SNPPKLRRNS SAAANISNLA SSSNQAPLKR SSSWSFDEKL LVQSLYKVLA YVSKANPIVL YLRDVENFLF RSQRTYNLFQ KLLQKLSGPV 301: LILGSRIVDL SSEDAQEIDE KLSAVFPYNI DIRPPEDETH LVSWKSQLER DMNMIQTQDN RNHIMEVLSE NDLICDDLES ISFEDTKVLS NYIEEIVVSA 401: LSYHLMNNKD PEYRNGKLVI SSISLSHGFS LFREGKAGGR EKLKQKTKEE SSKEVKAESI KPETKTESVT TVSSKEEPEK EAKAEKVTPK APEVAPDNEF 501: EKRIRPEVIP AEEINVTFKD IGALDEIKES LQELVMLPLR RPDLFTGGLL KPCRGILLFG PPGTGKTMLA KAIAKEAGAS FINVSMSTIT SKWFGEDEKN 601: VRALFTLASK VSPTIIFVDE VDSMLGQRTR VGEHEAMRKI KNEFMSHWDG LMTKPGERIL VLAATNRPFD LDEAIIRRFE RRIMVGLPAV ENREKILRTL 701: LAKEKVDENL DYKELAMMTE GYTGSDLKNL CTTAAYRPVR ELIQQERIKD TEKKKQREPT KAGEEDEGKE ERVITLRPLN RQDFKEAKNQ VAASFAAEGA 801: GMGELKQWNE LYGEGGSRKK EQLTYFL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)