AT1G64100.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.840 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : pentatricopeptide (PPR) repeat-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 60338 Blast hits to 14770 proteins in 304 species: Archae - 4; Bacteria - 64; Metazoa - 875; Fungi - 1011; Plants - 56325; Viruses - 0; Other Eukaryotes - 2059 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:23791585..23793641 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75022.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.92 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||
| Length | 666 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTLQSQSSHC LNVHSSMVRD IEKCEQKTKR DIEKKNTKSG GVRLNSRRLI HGRVAEKGTK SLPSLTQVTF EGEELKLKSG SHYFKSLDDA IDFFDYMVRS 101: RPFYTAVDCN KVIGVFVRMN RPDVAISLYR KMEIRRIPLN IYSFNILIKC FCDCHKLSFS LSTFGKLTKL GFQPDVVTFN TLLHGLCLED RISEALALFG 201: YMVETGFLEA VALFDQMVEI GLTPVVITFN TLINGLCLEG RVLEAAALVN KMVGKGLHID VVTYGTIVNG MCKMGDTKSA LNLLSKMEET HIKPDVVIYS 301: AIIDRLCKDG HHSDAQYLFS EMLEKGIAPN VFTYNCMIDG FCSFGRWSDA QRLLRDMIER EINPDVLTFN ALISASVKEG KLFEAEKLCD EMLHRCIFPD 401: TVTYNSMIYG FCKHNRFDDA KHMFDLMASP DVVTFNTIID VYCRAKRVDE GMQLLREISR RGLVANTTTY NTLIHGFCEV DNLNAAQDLF QEMISHGVCP 501: DTITCNILLY GFCENEKLEE ALELFEVIQM SKIDLDTVAY NIIIHGMCKG SKVDEAWDLF CSLPIHGVEP DVQTYNVMIS GFCGKSAISD ANVLFHKMKD 601: NGHEPDNSTY NTLIRGCLKA GEIDKSIELI SEMRSNGFSG DAFTIKMVAD LITDGRLDKS FSDMLS |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)