AT1G64070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RESISTANCE TO LEPTOSPHAERIA MACULANS 1 (RLM1); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: defense response to fungus, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, sepal, flower, carpel, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT2G16870.1); Has 18146 Blast hits to 14776 proteins in 597 species: Archae - 15; Bacteria - 1058; Metazoa - 1168; Fungi - 58; Plants - 15498; Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:23779949..23783449 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 113181.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.47 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 997 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSSSSASR TWRYRVFTSF HGSDVRTSFL SHFRKQFNNN GITMFDDQRI LRGETISPAL TQAIRESRIS IVLLSKNYAS SGWCLDELLE ILKCKDDMGQ 101: IVMTVFYGVD PSDVRKQTGE FGIAFNETCA CRTEEERQKW SQALNYVGNI AGEHLLNWDN EAKMIEKIAR DVSEKLNVTP CRDFDGMVGI EAHLRKIQSL 201: LDLDNDEVKM VAISGPAGIG KSTIGRALHS LLSNRFHHTC FVDNLRGSHP IGLDEYGLKL RLQEQLLSKI LNQDGSRICH LGAIKERLCD MKVFIILDDV 301: NDVKQLEALA NESNWFGPGS RIIVTTENKE LLKQHGINNT YYVGFPSDEE AIKILCRYAF RQSSSRHGFK KLTRSVTELC GKLPLGLRVV GSSLHGKNEE 401: EWEYVIRRLE TIIDRDIEQV LRVGYESLHE NEQSLFLHIA IFFNYEDGDL VKAMLAENDL DIEHELNILV NKSLIYISTD GRIRMHKLLQ LVGRQANQRE 501: EPWKRRILID AQEICHVLEN DIGTGAVSGI LFDTSGINEV SISNKALRRM CNLRFLSVYK TKHDGYNRMD IPEDMEFPPR LRLLHWDAYP SKCLPLKFRA 601: ENLVELDMKD SRLEYLWPGT QLLTKLKKLN LEGSYNLKEL PDLSNATNLE MLDLSVCLAL AELPSSIKNL HKLDVIYMDL CESLHMIPTN INLASLETMY 701: MTGCPQLKTF PAFSTKIKRL YLVRTGVEEV PASITHCSRL LKIDLSGSRN LKSITHLPSS LQTLDLSSTD IEMIADSCIK DLQRLDHLRL CRCRKLKSLP 801: ELPASLRLLT AEDCESLERV TYPLNTPTGQ LNFTNCLKLG EEAQRVIIQQ SLVKHACFPG SVMPSEFNHR ARGNSLKILV KSSASFAFKA CVLISPRQLQ 901: CERNQRRVKI RCRVTDGRGR FVGSKVVSLE HPNHSTGIRT KHLCFFNGVL TEVSCDALCF VFKISAYNPL DNYEISECAV QILTNEPERR SCDGGSE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)