AT1G63870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G63880.1); Has 19720 Blast hits to 15752 proteins in 683 species: Archae - 12; Bacteria - 1411; Metazoa - 1255; Fungi - 60; Plants - 16579; Viruses - 2; Other Eukaryotes - 401 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:23707131..23711901 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 117614.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.77 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1031 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSLMDSPSSI SSCNYRFNVF SSFHGPNVRK TLLSHMRKQF NFNGITMFDD QGIERSEEIV PSLKKAIKES RISIVILSKK YALSRWCLDE LVEILKCKEV 0101: MGHIVMTIFY GVEPSDVRKQ TGEFGFHFNE TCAHRTDEDK QNWSKALKDV GNIAGEDFLR WDNEAKMIEK IARDVSDKLN ATPSRDFNGM VGLEAHLTEM 0201: ESLLDLDYDG VKMVGISGPA GIGKTTIARA LQSRLSNKFQ LTCFVDNLKE SFLNSLDELR LQEQFLAKVL NHDGIRICHS GVIEERLCKQ RVLIILDDVN 0301: HIMQLEALAN ETTWFGSGSR IVVTTENKEI LQQHGINDLY HVGFPSDEQA FEILCRYAFR KTTLSHGFEK LARRVTKLCG NLPLGLRVLG SSLRGKNEEE 0401: WEEVIRRLET ILDHQDIEEV LRVGYGSLHE NEQSLFLHIA VFFNYTDGDL VKAMFTDNNL DIKHGLKILA DKSLINISNN REIVIHKLLQ QFGRQAVHKE 0501: EPWKHKILIH APEICDVLEY ATGTKAMSGI SFDISGVDEV VISGKSFKRI PNLRFLKVFK SRDDGNDRVH IPEETEFPRR LRLLHWEAYP CKSLPPTFQP 0601: QYLVELYMPS SQLEKLWEGT QRLTHLKKMN LFASRHLKEL PDLSNATNLE RMDLSYCESL VEIPSSFSHL HKLEWLEMNN CINLQVIPAH MNLASLETVN 0701: MRGCSRLRNI PVMSTNITQL YVSRTAVEGM PPSIRFCSRL ERLSISSSGK LKGITHLPIS LKQLDLIDSD IETIPECIKS LHLLYILNLS GCRRLASLPE 0801: LPSSLRFLMA DDCESLETVF CPLNTPKAEL NFTNCFKLGQ QAQRAIVQRS LLLGTTLLPG RELPAEFDHQ GKGNTLTIRP GTGFVVCIVI SPNLASQITE 0901: YRLPQLLCRR RIGQGDLDPI EKVFNVRTLL NFQTEHLFVF IIHPHLPFID PSEVSREIVF EFSSKFNHFD VIDCGAKFLT DGSIKGSYDS GLEQVFEDNT 1001: KHGDHADCWN WLFHCFDLPH FVKNVRSFVS V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)