AT1G63400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62590.1); Has 69149 Blast hits to 15301 proteins in 308 species: Archae - 5; Bacteria - 75; Metazoa - 1145; Fungi - 1297; Plants - 63981; Viruses - 0; Other Eukaryotes - 2646 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:23507320..23509053 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64955.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.06 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||
| Length | 577 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRISISSVVS STTSRFVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS GDYREILRNG LHSMKLDDAI GLFGGMVKSR PLPSIFEFNK LLSAIAKMKK 101: FDLVISLGEK MQRLGISHNL YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL 201: FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD IDLAFNLLNK MEAAKIEANV VIYSTVIDSL CKYRHEDDAL NLFTEMENKG VRPNVITYSS 301: LISCLCNYER WSDASRLLSD MIERKINPNV VTFNALIDAF VKEGKLVEAE KLYDEMIKRS IDPDIFTYSS LINGFCMHDR LDEAKHMFEL MISKDCFPNV 401: VTYNTLINGF CKAKRIDEGV ELFREMSQRG LVGNTVTYTT LIHGFFQARD CDNAQMVFKQ MVSDGVHPNI MTYNTLLDGL CKNGKLEKAM VVFEYLQRSK 501: MEPTIYTYNI MIEGMCKAGK VEDGWDLFCS LSLKGVKPDV IIYNTMISGF CRKGLKEEAD ALFRKMREDG PLPDSGT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)