AT1G63330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.924 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62590.1); Has 64592 Blast hits to 15428 proteins in 305 species: Archae - 4; Bacteria - 72; Metazoa - 1099; Fungi - 1181; Plants - 59820; Viruses - 0; Other Eukaryotes - 2416 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:23489840..23491519 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62853.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.20 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||
| Length | 559 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKSRPLPSI FEFNKLLSAI AKMKKFDLVI SLGEKMQRLG ISHNLYTYNI LINCFCRRSQ ISLALALLGK MMKLGYEPSI VTLSSLLNGY CHGKRISDAV 101: ALVDQMVEMG YRPDTITFTT LIHGLFLHNK ASEAVALVDR MVQRGCQPNL VTYGVVVNGL CKRGDIDLAF NLLNKMEAAK IEADVVIFNT IIDSLCKYRH 201: VDDALNLFKE METKGIRPNV VTYSSLISCL CSYGRWSDAS QLLSDMIEKK INPNLVTFNA LIDAFVKEGK FVEAEKLHDD MIKRSIDPDI FTYNSLINGF 301: CMHDRLDKAK QMFEFMVSKD CFPDLDTYNT LIKGFCKSKR VEDGTELFRE MSHRGLVGDT VTYTTLIQGL FHDGDCDNAQ KVFKQMVSDG VPPDIMTYSI 401: LLDGLCNNGK LEKALEVFDY MQKSEIKLDI YIYTTMIEGM CKAGKVDDGW DLFCSLSLKG VKPNVVTYNT MISGLCSKRL LQEAYALLKK MKEDGPLPDS 501: GTYNTLIRAH LRDGDKAASA ELIREMRSCR FVGDASTIGL VANMLHDGRL DKSFLDMLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)