suba logo
AT1G62880.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 0.700
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cornichon family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cornichon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling pathway; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: Cornichon family protein (TAIR:AT1G12390.1); Has 615 Blast hits to 615 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 316; Fungi - 159; Plants - 94; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Protein Annotations
BioGrid:27810eggNOG:ENOG4111MWHeggNOG:KOG2729EMBL:AC011000
EMBL:AK118647EMBL:BT004730EMBL:CP002684EnsemblPlants:AT1G62880
EnsemblPlants:AT1G62880.1entrez:842589ExpressionAtlas:Q8GWT5GeneID:842589
Genevisible:Q8GWT5GO:GO:0005622GO:GO:0016021GO:GO:0035556
hmmpanther:PTHR12290hmmpanther:PTHR12290:SF18HOGENOM:HOG000214661InParanoid:Q8GWT5
IntAct:Q8GWT5InterPro:IPR003377OMA:FWLIYSTPaxDb:Q8GWT5
Pfam:PF03311Pfam:Q8GWT5PhylomeDB:Q8GWT5PIR:D96653
PRO:PR:Q8GWT5ProteinModelPortal:Q8GWT5Proteomes:UP000006548RefSeq:NP_176476.1
SMART:SM01398STRING:3702.AT1G62880.1TAIR:AT1G62880TMHMM:TMhelix
UniGene:At.70087UniProt:Q8GWT5
Coordinates (TAIR10) chr1:+:23292125..23293307
Molecular Weight (calculated) 16443.30 Da
IEP (calculated) 4.57
GRAVY (calculated) 0.69
Length 137 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEVWTWIIS FLILITLLGL IVYQLISLAD LEFDYINPYD SASRINFVVL PESILQGFLC VFYLVTGHWF MALLCVPYLY YNFHLYSRKQ HLIDVTEIFN
101: LLDWEKKKRL FKLAYIILTL FLTIFWLIYS TLDDYED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)