AT1G62680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G63130.1); Has 64113 Blast hits to 15255 proteins in 308 species: Archae - 5; Bacteria - 67; Metazoa - 910; Fungi - 1189; Plants - 59601; Viruses - 0; Other Eukaryotes - 2341 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:23208247..23209893 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61452.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.50 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.01 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 548 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQRSIAMTAK RFLHRNLLEN GKPRTASSPS FSHCSSCRCW VRASSSVSGG DLRERLSKTR LRDIKLNDAI DLFSDMVKSR PFPSIVDFNR LLSAIVKLKK 101: YDVVISLGKK MEVLGIRNDL YTFNIVINCF CCCFQVSLAL SILGKMLKLG YEPDRVTIGS LVNGFCRRNR VSDAVSLVDK MVEIGYKPDI VAYNAIIDSL 201: CKTKRVNDAF DFFKEIERKG IRPNVVTYTA LVNGLCNSSR WSDAARLLSD MIKKKITPNV ITYSALLDAF VKNGKVLEAK ELFEEMVRMS IDPDIVTYSS 301: LINGLCLHDR IDEANQMFDL MVSKGCLADV VSYNTLINGF CKAKRVEDGM KLFREMSQRG LVSNTVTYNT LIQGFFQAGD VDKAQEFFSQ MDFFGISPDI 401: WTYNILLGGL CDNGELEKAL VIFEDMQKRE MDLDIVTYTT VIRGMCKTGK VEEAWSLFCS LSLKGLKPDI VTYTTMMSGL CTKGLLHEVE ALYTKMKQEG 501: LMKNDCTLSD GDITLSAELI KKMLSCGYAP SLLKDIKSGV CKKALSLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)