AT1G62490.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.823 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Mitochondrial transcription termination factor family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G61960.1); Has 280 Blast hits to 258 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 278; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:23130405..23131533 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37856.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.79 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||
| Length | 334 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSESKTQMTN FVFPLQNLVL RDFLGSKIDP RSGRDLTGYV MCSLILHGRR SIELHKWRNF SVSVKLLQNV FSAFSNSFST VASAAADVSL IDSQKGKNFT 101: VSYLVDSLGL PKKLAESISK KFRFEDKANP DSVLSLLRSH GFTVSQISIP KLLGKRGHKT LSLYYDFVKE SLEADKSSKY ETLCQSFPQG NLENKKRNVS 201: VLRELGMPHK LLFPLLISVG QPVCGKDRFN TSLKKVVEMG FDPTTAKFVK ALHVSYEMND KTIEEKVNVY KMLGFAVEDV WVIFKKWPYS LKYSEEKITQ 301: TIETLKMCGL RGPSSFEEVS SIHTYLRAED IELN |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)