AT1G62262.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.882 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SLAC1 homologue 4 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Predicted to encode a protein with similarity to the SLAC1 protein involved in ion homeostasis in guard cells. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SLAC1 homologue 4 (SLAH4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cellular ion homeostasis; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: C4-dicarboxylate transporter/malic acid transport protein (InterPro:IPR004695); BEST Arabidopsis thaliana protein match is: SLAC1 homologue 1 (TAIR:AT1G62280.1); Has 728 Blast hits to 725 proteins in 288 species: Archae - 2; Bacteria - 533; Metazoa - 0; Fungi - 10; Plants - 154; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:23000318..23001491 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41585.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.14 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.57 | ||||||||||||||||||||||||||||||||||||||||
| Length | 365 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEIPSQEIHI MIDNTISRRK ERKTNLADAE PIVLMSVLSS LHAGYFRISL SLCSQALLWK IMVHLHSELP SMAYYLLWYL ALATQVSLCF LYAFKCIFLF 101: DMVKEEFSHY IGVNYLYAPS ISCLLLLQSA PMIEPHSVLY QTLFWIFAVP VLTLDTKLYG QWFTTEKRFL SIMANPASQV SVIANLVAAR GAAEMGWKEC 201: ALCLFSLGMV HYLVIFVTLY QRLPGGNNFP TTLRPVFFLF FAAPATASLA WNSICGNFDT IAKMLFFLSL FIFISLVCRP NLLKKSIKRF NVAWWAYSFP 301: ITFLALNSVQ YAQEVKDHVA SVLMFIFSSM SVLIFISVML LTAANSKRLL RRDHVLWSST GPKDK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)