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AT1G62262.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.882
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : SLAC1 homologue 4
Curator
Summary (TAIR10)
Predicted to encode a protein with similarity to the SLAC1 protein involved in ion homeostasis in guard cells.
Computational
Description (TAIR10)
SLAC1 homologue 4 (SLAH4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cellular ion homeostasis; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: C4-dicarboxylate transporter/malic acid transport protein (InterPro:IPR004695); BEST Arabidopsis thaliana protein match is: SLAC1 homologue 1 (TAIR:AT1G62280.1); Has 728 Blast hits to 725 proteins in 288 species: Archae - 2; Bacteria - 533; Metazoa - 0; Fungi - 10; Plants - 154; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEAVeggNOG:ENOG410YDIVEMBL:AC000375EMBL:CP002684
EMBL:DQ108890EnsemblPlants:AT1G62262EnsemblPlants:AT1G62262.1entrez:5007829
GeneID:5007829GO:GO:0005886GO:GO:0006873GO:GO:0008308
GO:GO:0016021Gramene:AT1G62262.1hmmpanther:PTHR31269hmmpanther:PTHR31269:SF9
HOGENOM:HOG000237712InParanoid:A8MRV9InterPro:IPR004695InterPro:IPR030183
KEGG:ath:AT1G62262OMA:ESAICIFPANTHER:PTHR31269:SF9PaxDb:A8MRV9
Pfam:A8MRV9Pfam:PF03595PhylomeDB:A8MRV9PRIDE:A8MRV9
PRO:PR:A8MRV9ProteinModelPortal:A8MRV9Proteomes:UP000006548RefSeq:NP_001077757.1
STRING:3702.AT1G62262.1TAIR:AT1G62262tair10-symbols:SLAH4TMHMM:TMhelix
UniGene:At.66077UniProt:A8MRV9
Coordinates (TAIR10) chr1:-:23000318..23001491
Molecular Weight (calculated) 41585.60 Da
IEP (calculated) 9.14
GRAVY (calculated) 0.57
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIPSQEIHI MIDNTISRRK ERKTNLADAE PIVLMSVLSS LHAGYFRISL SLCSQALLWK IMVHLHSELP SMAYYLLWYL ALATQVSLCF LYAFKCIFLF
101: DMVKEEFSHY IGVNYLYAPS ISCLLLLQSA PMIEPHSVLY QTLFWIFAVP VLTLDTKLYG QWFTTEKRFL SIMANPASQV SVIANLVAAR GAAEMGWKEC
201: ALCLFSLGMV HYLVIFVTLY QRLPGGNNFP TTLRPVFFLF FAAPATASLA WNSICGNFDT IAKMLFFLSL FIFISLVCRP NLLKKSIKRF NVAWWAYSFP
301: ITFLALNSVQ YAQEVKDHVA SVLMFIFSSM SVLIFISVML LTAANSKRLL RRDHVLWSST GPKDK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)