AT1G62260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : mitochondrial editing factor 9 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes MITOCHONDRIAL EDITING FACTOR 9 (MEF9), an E subclass PPR protein required for RNA editing. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
mitochondrial editing factor 9 (MEF9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytidine to uridine editing; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G02750.1); Has 48341 Blast hits to 14172 proteins in 260 species: Archae - 3; Bacteria - 22; Metazoa - 134; Fungi - 182; Plants - 47365; Viruses - 0; Other Eukaryotes - 635 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:22997826..22999796 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74173.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.30 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 656 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIRSRSVLLI FRKVLYQSSC LKCLLCANSF STSVSSSLGF RATNKELNQM IRSGYIAEAR DIFEKLEARN TVTWNTMISG YVKRREMNQA RKLFDVMPKR 101: DVVTWNTMIS GYVSCGGIRF LEEARKLFDE MPSRDSFSWN TMISGYAKNR RIGEALLLFE KMPERNAVSW SAMITGFCQN GEVDSAVVLF RKMPVKDSSP 201: LCALVAGLIK NERLSEAAWV LGQYGSLVSG REDLVYAYNT LIVGYGQRGQ VEAARCLFDQ IPDLCGDDHG GEFRERFCKN VVSWNSMIKA YLKVGDVVSA 301: RLLFDQMKDR DTISWNTMID GYVHVSRMED AFALFSEMPN RDAHSWNMMV SGYASVGNVE LARHYFEKTP EKHTVSWNSI IAAYEKNKDY KEAVDLFIRM 401: NIEGEKPDPH TLTSLLSAST GLVNLRLGMQ MHQIVVKTVI PDVPVHNALI TMYSRCGEIM ESRRIFDEMK LKREVITWNA MIGGYAFHGN ASEALNLFGS 501: MKSNGIYPSH ITFVSVLNAC AHAGLVDEAK AQFVSMMSVY KIEPQMEHYS SLVNVTSGQG QFEEAMYIIT SMPFEPDKTV WGALLDACRI YNNVGLAHVA 601: AEAMSRLEPE SSTPYVLLYN MYADMGLWDE ASQVRMNMES KRIKKERGSS WVDSST |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)