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AT1G62085.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mitochondrial transcription termination factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G62110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT49eggNOG:KOG1267EMBL:AC000375EMBL:CP002684
EnsemblPlants:AT1G62085EnsemblPlants:AT1G62085.1entrez:2745844GeneID:2745844
GO:GO:0003690GO:GO:0005739GO:GO:0006355Gramene:AT1G62085.1
hmmpanther:PTHR13068hmmpanther:PTHR13068:SF31HOGENOM:HOG000113939InterPro:IPR003690
KEGG:ath:AT1G62085KO:K15032OMA:ELMATFTPfam:PF02536
PhylomeDB:O04576PIR:D96647Proteomes:UP000006548RefSeq:NP_974069.1
SMART:SM00733STRING:3702.AT1G62085.1TAIR:AT1G62085UniGene:At.66074
UniProt:O04576
Coordinates (TAIR10) chr1:-:22948757..22950142
Molecular Weight (calculated) 51568.10 Da
IEP (calculated) 9.81
GRAVY (calculated) -0.12
Length 461 amino acids
Sequence (TAIR10)
(BLAST)
001: MYSLILHGKR LVQLKKCRHL SVPVNLLEKA SPFSNSFSYA NATDASLRAG RKGLSFSVSY LVDSLGLPKK VAESISKKVS FEDKGNPDSV LSLLRSHGFT
101: DSQISSIITD YPQLLVADAE KSIGPKLQFL QSRGASRSEL THIVSTVPEI LGKRGDKTIS IYYDFVKEII EADKSSKFEK LCHSLPEGSK QENKIRNVLV
201: LRELGVPQRL LFPLLISDHQ PVCGKENFEE SLKKVVEMGF DPTTSKFVKA LRVVYRFRDK TIEAKVNVCK SLGFSVGDVW AMFKKCPSFL NFSENKIVQT
301: WETLKKCGLL EDDVLSVLKK FPQCINASEQ KIMNSIETFL GLGFSRDEVA MIAKRFPQCL ILSAETVKKK TEFLVKKMNW PLKAVVSTPA VLGYSLEKRT
401: IPRCNVIKAL MSKGSLGSEL PGMSSVLVCT NEEFLCRYVK NHDDKKIVPE LMAIFTGDRV S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)