AT1G62050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ankyrin repeat family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ankyrin repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Protein of unknown function DUF3424 (InterPro:IPR021832), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G11740.1); Has 1256 Blast hits to 984 proteins in 147 species: Archae - 0; Bacteria - 27; Metazoa - 615; Fungi - 59; Plants - 389; Viruses - 2; Other Eukaryotes - 164 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:22936323..22938874 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69953.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.21 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||
| Length | 624 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARPSSASAT TAIRPEDYSH SPVHYAVVLG DHGALTRLLS SLPKLGDPEQ IRTESDSLSQ ERVADQISAV LDRRDVPSRE TPLHLAVRLD DLFAARAISS 101: AGGDISLQNA SGWNPLQEAF CRRNSEVMKV LLRHHHRLAW CKWRRRLPRL IAVLRRMRDF YMEISFHFES SVIPFVGKIA PSDTYKIWKR DGNLRADTTL 201: AGFDGLKIQR ADQSFLFLGD GDESLDISPG SLLVLNRDDR KILDAFESAG APISDSDIAG FCSQSSLYRP GMDVTKAELV GRTNWRRQEK MENVGEWKAR 301: VYEIQKVTFS FRSRKIVTGD GSEQVLPLEL DEDDEGFLVA ENPSFLAPPP RSQRRHSSFV KEDRDWISVG RKSVDVYPSA APPPPRQSQS PRRSVSQFQP 401: PRRSMAQVQP PRRSVAQAQP PRRSVALPST VSPVNPPPSP QIKEKEFVKS LHPSVWLTEQ FPLKTEELLP LLDILANKVK AVARMRDLLT TKFPPGTFPV 501: KLSIPVVPTV KVVITFTKFV ELPPAETFYT PLSSPRFLYS ATAGEEDHSD GEKPDARNSI SRPSTWLRLA TGKGSHRRVE EEEQQTPDPF AIPIGYKWTS 601: MSSSNSKSGN SSKMKKSKST KRTK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)