AT1G61940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.979 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tubby like protein 4 | ||||||||||||
| Curator Summary (TAIR10) |
Member of TLP family | ||||||||||||
| Computational Description (TAIR10) |
tubby like protein 4 (TLP4); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 3 (TAIR:AT2G47900.3); Has 436 Blast hits to 371 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 436; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:22897399..22898575 | ||||||||||||
| Molecular Weight (calculated) | 28039.00 Da | ||||||||||||
| IEP (calculated) | 9.30 | ||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||
| Length | 244 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPPELLRDVL MRIERSEDTW PSRKNVVSCV GVCKNWRQIF KEIVNVPEVS SKFTFPISLK QEDHLFNAML RETVAIKLSI YTLEVKQKYF VSDIYLVPYS 101: YRETHCVMDA ISASAVKPGG TATTQTELDN FVSFRSPSGQ KEGVLVLKSK VPRLEEQSWC LDFNGWRDIV SSGKKFQLYE AEWIPLVRTS VFAVIARVCR 201: DKKHTPSYEL KLALYFAKNS AILKKFVLRG YTREEDLLAL PVAN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)