AT1G61840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.664 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G40050.1); Has 2099 Blast hits to 677 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 2072; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:22847389..22849833 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93005.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.47 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||
| Length | 814 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSIGRFHET ETDDKLYQQL VYYHPKYTPI PQTKSPTSSH KTASHDLLFQ PLFLCPHPRV TKQLSDSITF PISNSPEYIV SATKSDQKYE DHSLLPLFWC 101: NNKEIDVDGG CDICSGSNFG TDYYLCVHCD SIYHKECVQS PFKIEHPYHP EHSLQLSYLD LNARIMECFC CGRRATYLVY YCTICDVLMH TVCAMKSIPL 201: GGFHELENNG KLFFVYHHPK YQPIPQTKSP SSDKTANHDL PFQPLFLCPH LRVTKNSSDS LTYPISYSPE YIVSTTKSDE DLSVLPLFWC NNKEFNVDGG 301: CDICSGSNFG TDYYFCVYCD KIYHKECVQS PISIKHPYHP EHSLQLSYRL PSAPDIECLC CGTTATDLVY GCTICEAVMH TPCAMKSIPF VIDQPKSHDH 401: SLTLFPRQAS LTCNVCGLLR KNYPTFVCLR CNFVAHKDCM YSPHIIKISR HHHRISYTAS LQSEEWSCGV CRKSIDGDYG AYTCEKCKDY VVHVRCALRK 501: DVWDGVELEG VPEEDDITKD VGPFEIISEG VILHFLHDHH LQLEVSILYD EEKFCQACVI PIYEGNHYIC VECDFTIHEI CAKDRRRIQH ALHPHPLTLN 601: AVSKYDTGDF ECNACVRNSG GFVYMCSRKE CNFDLDVRCA SISEPFNFQG HEHSLFLAID PSEKPICQMC KSESHIPLNC IKCDFVVCIK CATLPFKAKY 701: KHDRHSLTIL WGEEVCGKDW CEVCERNLGD TDTKVFYWCN ECCTTLHIEC LYGEILYLKL GKYIFDSGGK EFQILGKATS SRPFCNICKN RCQGKIFTRD 801: NRIACSLICA SDIV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)