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AT1G61780.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.763
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : postsynaptic protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
postsynaptic protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Microtubule-associated protein CRIPT (InterPro:IPR019367); Has 230 Blast hits to 228 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 46; Plants - 56; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111RAIeggNOG:KOG3476EMBL:AC005882EMBL:AF370560
EMBL:AK118813EMBL:AY088819EMBL:CP002684EnsemblPlants:AT1G61780
EnsemblPlants:AT1G61780.1entrez:842475GeneID:842475Gramene:AT1G61780.1
hmmpanther:PTHR11805HOGENOM:HOG000242625InterPro:IPR019367KEGG:ath:AT1G61780
OMA:HGCAYKRPfam:PF10235PhylomeDB:Q9SYB4PIR:F96643
Proteomes:UP000006548RefSeq:NP_176371.1STRING:3702.AT1G61780.1TAIR:AT1G61780
UniGene:At.11061UniProt:Q9SYB4
Coordinates (TAIR10) chr1:-:22812822..22814016
Molecular Weight (calculated) 11113.60 Da
IEP (calculated) 9.74
GRAVY (calculated) -0.75
Length 98 amino acids
Sequence (TAIR10)
(BLAST)
1: MVCDKCEKKL SKVIVPDKWK DGARNVTEGG GRKINENKLL SKKNRWSPYS TCTTKCMICK QQVHQDGKYC HTCAYSKGVC AMCGKQVLDT KMYKQSNV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)