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AT1G61760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.971
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT4G05220.1); Has 824 Blast hits to 824 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 824; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW09eggNOG:ENOG410YH5EEMBL:AC005882EMBL:CP002684
EnsemblPlants:AT1G61760EnsemblPlants:AT1G61760.1entrez:842473GeneID:842473
GO:GO:0016021Gramene:AT1G61760.1hmmpanther:PTHR31415hmmpanther:PTHR31415:SF3
HOGENOM:HOG000241049InterPro:IPR004864KEGG:ath:AT1G61760OMA:CEVAVGP
Pfam:PF03168PhylomeDB:Q9SYB2PIR:D96643Proteomes:UP000006548
RefSeq:NP_176369.1SUPFAM:0051044TAIR:AT1G61760TMHMM:TMhelix
UniGene:At.66072UniProt:Q9SYB2
Coordinates (TAIR10) chr1:-:22807440..22808114
Molecular Weight (calculated) 25869.50 Da
IEP (calculated) 10.58
GRAVY (calculated) -0.37
Length 224 amino acids
Sequence (TAIR10)
(BLAST)
001: MHNKVDSLPV RSNPSTRPIS RHHSASNIVH RVKESLTTRV SKLICAIFLS LLLCLGIITF ILWISLQPHR PRVHIRGFSI SGLSRPDGFE TSHISFKITA
101: HNPNQNVGIY YDSMEGSVYY KEKRIGSTKL TNPFYQDPKN TSSIDGALSR PAMAVNKDRW MEMERDRNQG KIMFRLKVRS MIRFKVYTWH SKSHKMYASC
201: YIEIGWDGML LSATKDKRCP VYFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)