AT1G61540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.986 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Galactose oxidase/kelch repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39590.1); Has 1659 Blast hits to 1561 proteins in 111 species: Archae - 2; Bacteria - 82; Metazoa - 518; Fungi - 4; Plants - 1010; Viruses - 4; Other Eukaryotes - 39 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:22702498..22703706 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46399.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.72 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||
| Length | 402 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNGEKPLRER KKKMPYPSPV TEEPISIMSL PYDLLLNCFS LVSRLYYPTL SLVSKTFRSI ITSRELYEIR SRLNRTDKCL YLCFPYDMNT HWFTLCREPN 101: RNVAENSSGY LLVQVPSPNG LLPVHSSSVI AVGSNIYKIG GTKSYRHKLW KRTRYSSSVS VLDCRSHRWR QAPGMRVARG CSSTVCEVDG KIYIAGGCKE 201: DIGSLYWIEV FDPKTQTWGT LKNPCIEYQH DIGYRCEVKS LGLDGKIYMF GSEFVVYNFE EDRWKCIGRD KYNLYHAVDP MSRINSSSCV VDNVLFILDK 301: GTRVFKWYDF KVSLWKELNG VEGLPDLSDR GYVKMVDLGG KIAVLWQECL TNKKIKRIWC AEISLERRDR DEIWGKVEWF DIVLSVHSSF SLLCADTISV 401: VV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)