AT1G61410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA double-strand break repair and VJ recombination XRCC4 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA double-strand break repair and VJ recombination XRCC4; FUNCTIONS IN: DNA binding; INVOLVED IN: double-strand break repair, DNA recombination; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA double-strand break repair and VJ recombination XRCC4, C-terminal (InterPro:IPR014751), DNA double-strand break repair and VJ recombination XRCC4 (InterPro:IPR010585); BEST Arabidopsis thaliana protein match is: homolog of human DNA ligase iv-binding protein XRCC4 (TAIR:AT3G23100.2); Has 116 Blast hits to 116 proteins in 57 species: Archae - 0; Bacteria - 60; Metazoa - 15; Fungi - 3; Plants - 33; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:22658708..22659064 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 13221.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.15 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.11 | ||||||||||||||||||||||||||||||||
| Length | 118 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEANIRLSEE VVNKTRSFEK MKSEAERCLA QGEKLCDEKT EFENATYAKF LSVLNAKKAK LRAVRDKEDS VRAVEEEEST YKAESFESGR SDDEQSGEEA 101: SEKATSSKAR GGKRAARS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)