AT1G61320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FBD / Leucine Rich Repeat domains containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FBD / Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G61330.1); Has 419 Blast hits to 418 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 419; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:22617370..22619718 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53539.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.76 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||
| Length | 459 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPPTKRTRV EMAESSNKRM KPSETVPEDV LELMMSTYLP VQSLLTTRVL SKRFRETEVR SLDLDFSGIY SRRRRKVEVV GIIEKVFNQH KGSEIHRFVL 101: LLNHIGVEDK IISWTNTCFD KNIKELVLDF SKSRKVMAIP IDFSAVESLQ VLKLRWCKFE IPDSSPKGLK LLKTLSLMRT QVMVKTIDAI FNNCIHLESL 201: ELIECRMDGI LSIRAQNHKK FKSLVVSFMP DLRHIRLDAP TLENYKYDGY VICVNILITN ALKEANLYYT RIRRLYHQKS DLVDTLRFYT RLTVLATTTI 301: FLEALTKRYV GEGRLENPPF KFENLTEFKI SFITPTFCTL FDIAEFLKEC PKLKQVVIDI QNFTFEPQMY FWEIHHKAQI QNTSNNNYLL KCLTDVKIIG 401: YKGHWHELDI VEFFVKNAPS LKRLELQMPK NAKNDAHTPD VARIKLIKTI FSGVKVTEV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)