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AT1G61200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : homeobox-leucine zipper protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
homeobox-leucine zipper protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: homeobox-leucine zipper protein-related (TAIR:AT1G20280.1); Has 18 Blast hits to 18 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z2UEeggNOG:KOG0483EMBL:AC002294EMBL:CP002684
EnsemblPlants:AT1G61200EnsemblPlants:AT1G61200.1entrez:842413GeneID:842413
GO:GO:0003677Gramene:AT1G61200.1HOGENOM:HOG000114069KEGG:ath:AT1G61200
PhylomeDB:O22726PIR:H96637Proteomes:UP000006548RefSeq:NP_176315.1
STRING:3702.AT1G61200.1TAIR:AT1G61200UniProt:O22726
Coordinates (TAIR10) chr1:-:22563033..22563420
Molecular Weight (calculated) 8294.59 Da
IEP (calculated) 5.62
GRAVY (calculated) -0.86
Length 71 amino acids
Sequence (TAIR10)
(BLAST)
1: MESNSFFFNP SASHGNNMFF FRNLNPVVQG GGTRSMMNKE ETSKRRPFFS SLEDPYDDDY YDDHLLKIRG C
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)