AT1G61080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11070.1); Has 309070 Blast hits to 105260 proteins in 2835 species: Archae - 563; Bacteria - 69679; Metazoa - 122906; Fungi - 37150; Plants - 37869; Viruses - 8514; Other Eukaryotes - 32389 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:22493194..22497019 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 97879.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.02 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||
| Length | 907 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLFGRKSSSK LQPVKGQASP KVSKSSKQDV KTSSSSPKPS SSPIPIRSSK SILSGSYLTS SRRVSSPIGN LKNISVKEAR SPKTSSSPKW TGNFILMVEL 101: RRKIFTFRDI IDLSTLDGSP SITDVRKPQP YILMVMHTMK DLQKICPEII HSSHIMEIRR ANVDKVLDHF FNALKSIGDS WIDNPEWIAK SKYWSSSVGK 201: NQSDRLVEKV LAALDGLIKM SKERFDMMEI DEEEEKKEST SPQTGKTSSS RVLSPSESFS DSKSSFGSRN SFCGSPTTPR SVLPESMMGS PGRVGDFANS 301: ASHLLWNMRV QALEKLSPID VKRLAIHILS QKEAQEPNES NDEDVISVVE EIKQKKDEIE SIDVKMETEE SVNLDEESVV LNGEQDTIMK ISSLESTSES 401: KLNHSEKYEN SSQLFPPPPP PPPPPPLSFI KTASLPLPSP PPTPPIADIA ISMPPPPPPP PPPPAVMPLK HFAPPPPPPL PPAVMPLKHF APPPPTPPAF 501: KPLKGSAPPP PPPPPLPTTI AAPPPPPPPP RAAVAPPPPP PPPGTAAAPP PPPPPPGTQA APPPPPPPPM QNRAPSPPPM PMGNSGSGGP PPPPPPMPLA 601: NGATPPPPPP PMAMANGAAG PPPPPPRMGM ANGAAGPPPP PGAARSLRPK KAATKLKRST QLGNLYRILK GKVEGRDPNA KTGSGSGRKA GAGSAPAGGK 701: QGMADALAEI TKKSAYFLQI QADIAKYMTS INELKIEITK FQTKDMTELL SFHRRVESVL ENLTDESQVL ARCEGFPQKK LEAMRMAVAL YTKLHGMITE 801: LQNMKIEPPL NQLLDKVERY FTKIKETMVD ISSNCMELAL KEKRDEKLVS PDAKPSLKKT VGSAKMLWRA FQFAFKVYTF AGGHDDRADS LTRELAHEIQ 901: TDSDPNP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)