AT1G60995.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Membralin (InterPro:IPR019144); Has 172 Blast hits to 170 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:22465768..22470575 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71732.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.55 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||
| Length | 623 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPEQTFIRV QERFSQILTP RIRGFLEYTY LFVAITLFCI LVVMHANYVQ QPGCSSELTG VELAEAELMQ IKITSAGLWS RNDESTAADV PRVVAATDSL 101: EVSKTDQESS TSEENTDDTF VKIDKEEPRS SFSVSAKENV RAAILRFLKK CYRRISFVLQ HTARILRGVR KIWNIIGIPL NLDVPKLLHV LYMDKVNYYA 201: VQWLESKTQE FEPTYLYTME KGYFLLPDEA KSRHNIRTAN VSISARHPCF GNRWQQLLIN RVVGYDTIIM NSLQNSAGQG YLYNYQTREF YNLSYSQELP 301: DGSAHFGDYL VTKCGVLMMS LFVFFTTTMS VSFTLRETQT RMLKFTVQLQ HHAQHRLPTF QLIFVHVIES LVFVPIMIGI LFFLFEFYDD QLLAFMVLVL 401: VWLCELFTLI SVRTPISMKF FPRFFLLYFL VFHIYFFSYA YGFSYLALMT TAAFMQHLIL YFWNRFEVPA LQRFLQSRQS HLQQHPDFHI TSSTILASTL 501: HITRLNRTTR NRTPSGPNHT TPNQNTETRS FTADGGGVGN PAQYQEQQEE NEANTVPAEP NPQQAGAMSS FSSMLLWILG GASSEGLNSF LSMFRDVRDE 601: DEAQVFADTS PPQNPHHDPL SVD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)