AT1G60815.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : RALF-like 7 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RALF-like 7 (RALFL7); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALF-like 6 (TAIR:AT1G60625.1); Has 26 Blast hits to 26 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:22392729..22392974 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 9093.09 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.04 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||
| Length | 81 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
1: MSARKKNRIH VFFVSIMIII SLVSGFGEGI KQINYKDLIK DTIPGCTSKN PKECVKVPAN TYHRGCEIST RCHREQHSSS G | ||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)