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AT1G60660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cytochrome B5-like protein
Curator
Summary (TAIR10)
member of Cytochromes b5
Computational
Description (TAIR10)
cytochrome B5-like protein (CB5LP); FUNCTIONS IN: heme binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: cytochrome B5 isoform A (TAIR:AT1G26340.1); Has 3645 Blast hits to 3620 proteins in 449 species: Archae - 2; Bacteria - 26; Metazoa - 975; Fungi - 1355; Plants - 764; Viruses - 0; Other Eukaryotes - 523 (source: NCBI BLink).
Protein Annotations
BioGrid:27584eggNOG:COG5274eggNOG:KOG0537EMBL:AC002292
EMBL:AY049297EMBL:AY133575EMBL:CP002684EnsemblPlants:AT1G60660
EnsemblPlants:AT1G60660.1entrez:842360Gene3D:3.10.120.10GeneID:842360
Genevisible:O22704GO:GO:0016021GO:GO:0020037GO:GO:0046872
Gramene:AT1G60660.1hmmpanther:PTHR19359hmmpanther:PTHR19359:SF10HOGENOM:HOG000039853
InParanoid:O22704IntAct:O22704InterPro:IPR001199InterPro:IPR018506
KEGG:ath:AT1G60660OMA:HNKRNDCPaxDb:O22704Pfam:O22704
Pfam:PF00173Pfscan:PS50255PhylomeDB:O22704PIR:H96631
PRIDE:O22704PRINTS:PR00363PRO:PR:O22704PROSITE:PS00191
PROSITE:PS50255ProteinModelPortal:O22704Proteomes:UP000006548RefSeq:NP_176265.1
scanprosite:PS00191SMART:SM01117SMR:O22704STRING:3702.AT1G60660.1
SUPFAM:SSF55856TAIR:AT1G60660tair10-symbols:ATCB5LPtair10-symbols:B5 #5
tair10-symbols:CB5LPTMHMM:TMhelixUniGene:At.19208UniProt:O22704
Coordinates (TAIR10) chr1:-:22342589..22342954
Molecular Weight (calculated) 13710.20 Da
IEP (calculated) 5.57
GRAVY (calculated) -0.40
Length 121 amino acids
Sequence (TAIR10)
(BLAST)
001: MIAVIGLLLG FLVSALFLIQ GKRRRTNDNQ EKKRSSSEPV EDVVRPKSYS KSEVAVHNKR NDCWIIIKDK VYDITSYVEE HPGGDAILDH AGDDSTDGFF
101: GPQHATRVFD MIEDFYIGEL H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)