AT1G60340.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT1G60300.1); Has 658 Blast hits to 631 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 658; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:22238734..22240399 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42935.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.30 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||
| Length | 371 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDNDAAYDQ VKSELLNSED EVIISRYLKP MVVNGDSWPD HFIEDANVFT KNPNEVFNSE RPRFVIVKPR TEACGKTDGC ESGCWRTMGR DKLIKSEETG 101: KILGFKKILK FCIKWKPIEY KRSWVMEEYR LTNNLNWKQD HVICKIRLLF EAEISFLLAK HFYTTSESLL RHELLPSYGY LSNTQEEDEF YLKTIMTSEG 201: NDWPSYVTNN VYCLHPLELV DLQDVMFQSY GTCIFANGTC GESDKCDGGY WKILHGDKLI KSNFGMVTGF KKVFEFYETV IHRYFCDGEE VKEETERLGH 301: QRCQGLLLPH RRGHVQTKSC GVVTVKEKRS LVEQPEEIVA APETPRQGKS EHNDPLKRKK AIGCVGEKAE M |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)