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AT1G60300.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.731
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT1G60340.1); Has 1090 Blast hits to 1070 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1090; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC004473EMBL:CP002684EMBL:DQ056500EnsemblPlants:AT1G60300
EnsemblPlants:AT1G60300.1entrez:842325GeneID:842325GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
Gramene:AT1G60300.1hmmpanther:PTHR31124hmmpanther:PTHR31124:SF2HOGENOM:HOG000115140
InterPro:IPR003441KEGG:ath:AT1G60300OMA:WRIMEEDPfam:PF02365
Pfscan:PS51005PhylomeDB:O80752PIR:T02281PROSITE:PS51005
Proteomes:UP000006548RefSeq:NP_176235.1SMR:O80752SUPFAM:SSF101941
TAIR:AT1G60300UniGene:At.62382UniProt:O80752
Coordinates (TAIR10) chr1:-:22229780..22230748
Molecular Weight (calculated) 37853.10 Da
IEP (calculated) 5.34
GRAVY (calculated) -0.46
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDDDAAYDL IKHELLYSED EVIISRYLKG MVVNGDSWPD HFIEDANVFT KNPDKVFNSE RPRFVIVKPR TEACGKTDGC DSGCWRIIGR DKLIKSEETG
101: KILGFKKILK FCLKRKPIDY KRSWVMEEYR LTNNLNWKQD HVICKIRFMF EAEISFLLSK HFYTTSESVL ENELLPSYGY YLSNTQEEDE FYLDAIMTSE
201: GNEWPSYVTN NVYCLHPLEL VDLQDRMFND YGTCIFANKT CGETDKCDGG YWKILHGDKL IKSNFGKVIG FKKVFEFYET VRQIYLCDGE EVTVTWTIQE
301: YRLSKNVKQN KVLCVIKLTY DR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)