AT1G60130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mannose-binding lectin superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G60110.1); Has 1891 Blast hits to 649 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1886; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:22174179..22176321 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67010.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.21 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||
| Length | 600 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSQVFSNLFQ MTQRLEAQGQ KTLDSPFVWD DGSDHDDVTK IHVRGDSRGI NCIRFDYIKS GQRKYKSFYG PSWAGFTQTF KINHKEDEQL ESVEGFYKPD 101: SRTIVGLQFK TNLRISELIG HGKKDDTKFS LAVDGKKIIG FHGCSGSYLE SLGAYFTCIA PTRMEAKGAK GGTDWNDGAD HEGVAKIYVR GGRDCIQYIK 201: FDYVKDRKYI YGPAHGVRGR GFTESFEINH LDNEYMVSVE GYYDEGDSGI IQGIQFRTNI KTSELIGYNN GKKFSLAANG KKIIGFHGYA DQNLNSLGAY 301: FTTSPFIKLE SRESTGDLWD DGTFEGVRKV CIHKQPVLYS VIQFEYVNRG EVENRDLGLR VFIAEEGEFV VNYPYEFIIS VEGTFTNEKD PHVASLTFKT 401: SKGRTSSTFG TPGTKKFVLQ SKGCGVVGFH GVLSNDYISG LGAYFRLLPP LPDGEKVEAK GGDGGASWDD GGFDCIRKIY IGHGEMGIAF VKFLYDKDNK 501: FVVGDDHGSK TLLGVDEFEL EHPDEYLISV EGSYDVVDGS ESEVILMLRF KTNMRTSQVF GLDTTSSFIL EKECHKIVGF HGKIGKMLHQ IGVHVLPIID |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)