AT1G60095.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.990 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mannose-binding lectin superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G60110.1); Has 1880 Blast hits to 685 proteins in 36 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 0; Plants - 1871; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:22160099..22162265 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59135.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.48 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||
| Length | 531 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDRSMFEIDH KKDEQLVSVE GYCKPGSDLI QGVQFKTNLR ISEIIGFEKA IFGNPTTFSL AEDGKKIIGF HGYSMANLNS LGAYFTWISP TKMEAKGGKG 101: GTEWNDGAEH EGFTKIYVQG GCDGIQYIKF DYVKDGQHKY GSPHGVKGSE STEPFEINHL DKEYLISVEG YYDEGDSGVI QGIQFKTNIK TSELIGDKKG 201: RKFSLAANGK KIIGFHGYAD KNLNSLGAYF TTSPLISLEH TTGSDLVNHI WDDGSFEGVR KVYVRYDSLE ICYVEFDYDN KGKVEKREHG MFYSWVQQGE 301: FVVDYPNEFI TSVEGTMRTE SFMQVASLTF KTSKGRTSST FGSPSDSKFL LESKGCGVVG FYGRCFSSIF DLGAYFRPLP PPSNTEKVEA KGGDGGASWD 401: DGGFDGIRNI YIGHNKMGIA FVKFLYDKDS QIVVGDDHGS NTLLRVDEFE LEHPGEYLIS VEGSYDVVDG SESEVIRMLR FKTNLRTSQL FGHETTPSFI 501: LEKECHKIVG FHGKIGKMLH QIGVNVLPIT D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)