AT1G60090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : beta glucosidase 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
beta glucosidase 4 (BGLU4); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 2 (TAIR:AT4G22100.1); Has 11230 Blast hits to 10889 proteins in 1481 species: Archae - 144; Bacteria - 7786; Metazoa - 705; Fungi - 199; Plants - 1443; Viruses - 0; Other Eukaryotes - 953 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:22155582..22158065 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57974.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.88 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 512 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEQILALFAI FLAFAFSGKC SDVFSRSDYP EGFVFGAGTS AYQWEGAAAE DGRKPSLWDT LCHSRDQGNG DIACDGYHKY KDDVKLMVDT NLDAFRFSIS 101: WSRLIPNGRG PVNQKGLQFY KNLIQELVSH GIEPHVTLYH YDHPQSLEDE YGGWLNHRMI KDFTTYADVC FREFGNHVKL WTTINEANIF SIGGYNDGDT 201: PPGRCSKPSK NCSSGNSSIE PYIVGHNLLL AHASVSRRYK QKYKDKQGGS IGFSLFILGL IPTTSSKDDA TATQRAQDFY VGWFLRPLLF GDYPDTMKRT 301: IGSRLPVFSE KESEQVKGSC DFVGVIHYHA ASVTNIKSKP SLSGNPDFYS YMETDFGKSL DFQYANTPWA MEVVLEYIKQ SYGNPPVYIL ESAKFTFQWQ 401: QIGTPMKQDS QLKQKDIPRV EYLHAYIGGV LKSIRNGSDT RGYFVWSFMD LYELLGGYEV GFGLYTVNFS DPHRKRSPKL SAYWYSDFLK GESAFLDSQG 501: IKELQSKYSS SF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)