AT1G60050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.737 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nodulin MtN21 /EamA-like transporter family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nodulin MtN21 /EamA-like transporter family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G70260.1); Has 1250 Blast hits to 1238 proteins in 45 species: Archae - 0; Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 1185; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:22121550..22123702 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41137.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.68 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.48 | ||||||||||||||||||||||||||||||||||||||||
| Length | 374 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGLMDTRWET IVPFIVMALM EACTIALTIL AKTALTGGMS PFVFIVYTNA LGSLLLLPYS FYFHRDESDD EPFLTKPSLV RIFLLGFTGV FLFQNMAFLG 101: LSYSSPIVVC AMGLQSPAFS FLLSLALGKE GGLGWASKRT KGRVIGTLIC FTGAFVEVIY LGPFIRPSPP SSPTSNFLTT ISHYLTFFKN SDNWALGSLL 201: LACATLSISI WNIIQLDTVQ KYPQVMKVVS AYSLAGTLQC AIFSAFMEPD LSAWELKLNM DLYLIIATGI FGSIIRTSVQ VKCSKMKGPY YVPLFKPFGI 301: LWASIFGTSF FVNSLHYGSV LGAAIAGTGY LLIMWSQVQK DDPNETVEKN DNHQLDSDEQ TTPLLLANGD FDQV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)