AT1G59950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.945 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAD(P)-linked oxidoreductase superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase subgroup (InterPro:IPR020471), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G59960.1); Has 19785 Blast hits to 19765 proteins in 2347 species: Archae - 383; Bacteria - 13076; Metazoa - 1836; Fungi - 1652; Plants - 1267; Viruses - 0; Other Eukaryotes - 1571 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:22068033..22070588 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36031.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.19 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||
| Length | 320 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSALTFPIGS VHHLMPVLAL GTAASPPPEP IVLKRTVLEA IKLGYRHFDT SPRYQTEEPL GEALAEAVSL GLIQSRSELF VTSKLWCADA HGGLVVPAIQ 101: RSLETLKLDY LDLYLIHWPV SSKPGKYKFP IEEDDFLPMD YETVWSEMEE CQRLGVAKCI GVSNFSCKKL QHILSIAKIP PSVNQVEMSP VWQQRKLREL 201: CKSKGIVVTA YSVLGSRGAF WGTHKIMESD VLKEIAEAKG KTVAQVSMRW AYEEGVSMVV KSFRKDRLEE NLKIFDWSLT EEEKQRISTE ISQSRIVDGE 301: VYISEKGPIK SVTEMWDGEI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)