AT1G59890.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SIN3-like 5 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SIN3-like 5 (SNL5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 6 (TAIR:AT1G10450.1). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:22044326..22050670 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 132105.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.52 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1158 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKRVREEVYV EPQMRGPTVS SRGETNGRPS TISGGGTTGG LTTVDALTYL KAVKDMFQDN KEKYETFLGV MKDFKAQRVD TNGVIARVKD LFKGYDDLLL 0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN 0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAESLA NQGQWPGYPK VEDTEGIQIY ESNGGHERDP DIGSQKNLLS 0301: TNHMAKAINE LDLTDCAQCT PSYRRLPDDI PSYRNSLGEK VLNDHWVSVT SGSEDYSFKH MRKNQYEESL FRCEDDRFEL DMLLESVSAA IKRVESLLEK 0401: INNNTISIET PICIREHLSE LNLRCIERLY GDYGLDVMDF LKKNSHIALP VILTRLKQKQ EEWARCRADF RKVWAEVYAK NHHKSLDHRS FYFKQQDSKN 0501: LSTKGLVAEI KDISERKHKE DLLRAIAVGT KPSFTPDVEF IYTDTKVHTD LYKLIKYYCE EICATEQSDK VMKLWVTFLE PMFGVPSRSE TIETMKDVAK 0601: IEDNQEHHDA SEAVKENTCD GSMASNLKPL TPPKMPNKEN PMIQGSSFAQ DLPVNTGESI QQDKLHDVAA ITNEDSQPSK LVSTRNDLIM EGVENRSRVS 0701: DVSMGGHKVE REEGELSPTE SCEQENFEVY KENGLEPVQK LPDNEISNTD REPKEGACGT EAVTRSNALP EDDDNKITQK LSEGDENASK FIVSASKFGG 0801: QVSSDEEHKG AESENEAGGM VNSNEGEDGS FFTFSERYLQ PVKPLAKHVP GTLQASECDT RNDSRVFYGN DSLYVLFRLH QMLYERIQSA KIHSERKWKA 0901: PDSTSTDSYT RFMEALYNLL DGSSDNTKFE DECRAIIGAQ SYVLFTLDKL VQKFVKHLHA VAADETDTKL LQLYAYENYR KPGRFFDIVY HENARALLHD 1001: QNIYRIEYSS AQTRLGIQLM NSWNDQPEVT AVTVEPGFAN YLQNDFLSFV SDEEKPGLFL KRNKAKLSGP GEESLGMSRA LEGLNIINEV ECKIACSSFK 1101: VKYEPHTADL LYRRKQKKAT LNPTGPENVK TSDSSELSRK KRISRFHMSL NRRLVALP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)