AT1G59890.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SIN3-like 5 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SIN3-like 5 (SNL5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 6 (TAIR:AT1G10450.1). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:22044326..22050670 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 133034.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.63 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||||||
| Length | 1167 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKRVREEVYV EPQMRGPTVS SRGETNGRPS TISGGGTTGG LTTVDALTYL KAVKDMFQDN KEKYETFLGV MKDFKAQRVD TNGVIARVKD LFKGYDDLLL 0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN 0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAGNSL GKSLANQGQW PGYPKVEDTE GIQIYESNGG HERDPDIGSQ 0301: KNLLSTNHMA KAINELDLTD CAQCTPSYRR LPDDYPIQIP SYRNSLGEKV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF RCEDDRFELD MLLESVSAAI 0401: KRVESLLEKI NNNTISIETP ICIREHLSEL NLRCIERLYG DYGLDVMDFL KKNSHIALPV ILTRLKQKQE EWARCRADFR KVWAEVYAKN HHKSLDHRSF 0501: YFKQQDSKNL STKGLVAEIK DISERKHKED LLRAIAVGTK PSFTPDVEFI YTDTKVHTDL YKLIKYYCEE ICATEQSDKV MKLWVTFLEP MFGVPSRSET 0601: IETMKDVAKI EDNQEHHDAS EAVKENTCDG SMASNLKPLT PPKMPNKENP MIQGSSFAQD LPVNTGESIQ QDKLHDVAAI TNEDSQPSKL VSTRNDLIME 0701: GVENRSRVSD VSMGGHKVER EEGELSPTES CEQENFEVYK ENGLEPVQKL PDNEISNTDR EPKEGACGTE AVTRSNALPE DDDNKITQKL SEGDENASKF 0801: IVSASKFGGQ VSSDEEHKGA ESENEAGGMV NSNEGEDGSF FTFSERYLQP VKPLAKHVPG TLQASECDTR NDSRVFYGND SLYVLFRLHQ MLYERIQSAK 0901: IHSERKWKAP DSTSTDSYTR FMEALYNLLD GSSDNTKFED ECRAIIGAQS YVLFTLDKLV QKFVKHLHAV AADETDTKLL QLYAYENYRK PGRFFDIVYH 1001: ENARALLHDQ NIYRIEYSSA QTRLGIQLMN SWNDQPEVTA VTVEPGFANY LQNDFLSFVS DEEKPGLFLK RNKAKLSGPG EESLGMSRAL EGLNIINEVE 1101: CKIACSSFKV KYEPHTADLL YRRKQKKATL NPTGPENVKT SDSSELSRKK RISRFHMSLN RRLVALP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)