AT1G59850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G27210.1); Has 622 Blast hits to 550 proteins in 137 species: Archae - 2; Bacteria - 12; Metazoa - 156; Fungi - 145; Plants - 176; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:22028509..22030207 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54051.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.93 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||
| Length | 498 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPSVQIRSSP SHSQPAMTVT DLKQRVIACL NRLSDRDTLA LAAAELDSIA LNLSPETFSL FINCLQSTDS SAKSPVRKHC VSLLSVLSRS HGDSLAPHLS 101: KMVSTVLRRL RDPDSSVRAA CVAASVDMTT NITGQPFSIL FGPMIETVIH DCDPNAQISA AMCLAAAVDA ADEPDVEQLQ KALPKIGKLL KSEGFKAKAE 201: LLGAIGTVIG AVGGRNSEKA VLDWLLPNVS EFLSSDDWRA RKAAAEAMAR VAMVEEELAP LYKKTCLGIL ESRRFDKVKL VRETMNRTLG LWKQLEGDST 301: EVSESSSSSK SASSGLSATS GKRSNTLKGK DRNLNTPLSS KSNDVEPLDR GDTPKDVEQE AVVSKEKRNR STLGAKRVLF PAKMHKVKEN GSNKSQVVQS 401: SDEESPKTDS GSSSSSQAKS NAEELSLIRH QITQIEKQQS SLLDLFQKFM ESSHNGMQSL ERRVRGLETS FSVISTDLLV SRSITQNGNH KRNACRQN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)