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AT1G59630.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box associated ubiquitination effector family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G58090.1); Has 243 Blast hits to 243 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 243; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G59630EnsemblPlants:AT1G59630.1entrez:842253
GeneID:842253Gramene:AT1G59630.1hmmpanther:PTHR32133hmmpanther:PTHR32133:SF127
InParanoid:F4ID12InterPro:IPR006527InterPro:IPR017451KEGG:ath:AT1G59630
OMA:GQCFIEMPaxDb:F4ID12Pfam:PF07734PRIDE:F4ID12
Proteomes:UP000006548RefSeq:NP_176172.1TAIR:AT1G59630TIGRfam:TIGR01640
TIGRFAMs:TIGR01640UniGene:At.66054UniProt:F4ID12
Coordinates (TAIR10) chr1:-:21907177..21907955
Molecular Weight (calculated) 27114.20 Da
IEP (calculated) 9.05
GRAVY (calculated) -0.08
Length 239 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDFDVGGMV WNPLLRTTKL IAKDKQICGK SMGYDGTKPE KSYKIIGRCF TNAIYRVAVL ELATNAWKVL IVPDLTKSYK YPDTGQCFIE MLDLSKEVIK
101: IFCILPCKAN KSTSNTRILS IYKGDRFSVL QQSKRTGEIN IWVTEKEIGN GDNGDDVVWM KFMTLSRPDF PILLSHISTS YFVDNDIYGK SLVLCCPSTK
201: PRQAWVYIVR GDLCKKIKID GVQCRFQSSV YVPSLITIT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)