AT1G59500.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.981 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Auxin-responsive GH3 family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
GH3.4; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT4G37390.1); Has 1635 Blast hits to 1520 proteins in 238 species: Archae - 0; Bacteria - 543; Metazoa - 54; Fungi - 2; Plants - 674; Viruses - 0; Other Eukaryotes - 362 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:21854493..21856614 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 67050.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.23 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 597 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAVDSLLQSG MASPTTSETE VKALKFIEEI TRNPDSVQEK VLGEILSRNS NTEYLKRFDL NGAVDRKSFK SKVPVVIYED LKTDIQRISN GDRSPILSSH 101: PITEFLTSSG TSAGERKLMP TIEEDINRRQ LLGNLLMPVM NLYVPGLDKG KGLYFLFVKS ESTTSGGLPA RPALTSYYKS DYFRTSDSDS VYTSPKEAIL 201: CCDSSQSMYT QMLCGLLMRH EVNRLGAVFP SGLLRAISFL QNNWKELSQD ISTGTLSSKI FDHAIKTRMS NILNKPDQEL AEFLIGVCSQ ENWEGIITKI 301: WPNTKYLDVI VTGAMAEYIP MLEYYSGGLP MASMIYASSE SYFGINLNPM CKPSEVSYTI FPNMAYFEFL PHNHDGDGGV EATSLVELAD VEVGKEYELV 401: ITTYAGLYRY RVGDILRVTG FHNSAPQFKF IRRENVLLSI ESDKTDEADL QKAVENASRL LAEQGTRVIE YTSYADTKTI PGHYVIYWEL LSRDQSNALP 501: SDEVMAKCCL EMEESLNAVY RQSRVSDKSI GPLEIRVVQN GTFEELMDFS ISRGSSINQY KVPRCVSLTP IMKLLDSRVV SAHFSPSLPH WSPERRH |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)