AT1G59453.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : B-block binding subunit of TFIIIC | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
B-block binding subunit of TFIIIC; CONTAINS InterPro DOMAIN/s: B-block binding subunit of TFIIIC (InterPro:IPR007309); BEST Arabidopsis thaliana protein match is: B-block binding subunit of TFIIIC (TAIR:AT1G17450.2); Has 138 Blast hits to 121 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 3; Plants - 91; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:21846902..21853384 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 195444.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.65 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||
| Length | 1729 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDSIISTALD EICSQGNTGI PLVTLWSRLS PLSSSIKTHV WRNLLTIPQL QFKTKKNTVY GSSDTSIQNL DDALRLDLRI VANENLRANF VGLYDTQSNN 0101: TTIPAIQRRV LERLAIARDN GDAQNLLAKE FGIDGRNFFY SVKQLESRGL IVRQPAIVRT KEVDSKTTSC ITTNMIYLTR YAKPMGSQQR FEICKEDSVS 0201: EHETTAAGED TLINDFLPAM QEVCDKLEKA NDKVLVISDI KQDLGYTGSD IRHRAWRSVC RRLIDSHVVE EFDAMVNNKV ERCLRLLKRF SAEDFNYSRK 0301: KQLIKFGRSV QKTEQTLELS IDNQIYDMVD AQGSKGLAVM ELCERLGIDK KKIYARLCSI CSRVGMHLQA ESHKKTRVFR LWTSRHARSK SSDKFPDKAE 0401: NIRGEDNDSS TPHGTDGLAK TKTTMEHSTA ISDADFSTTP ASVTDSERNS GAKRRKVPTR RNLQESFNEI GEKVVNAAKG SPDLPKSAKS KVQQPHATIE 0501: NSRREHRILE RLKEEKFVLR VEFHKWLLTF EKDRSPKVDR KTIYRILDRR QDKGLCKCVG IRVPNVNDCD RSRCSVIVLH PSVQRLTRDI GNEIHDRIRS 0601: FELGFRSQRS SKRESDKTVP VLNDVQRAIR ASKSGAMRAK GVVLAKMFRV KLLHCFLWDY FSSLPGWDSA SSSIHHHISK NLFSLKDAFR AMPLQLFLQV 0701: VGSTQKADDI MKKYKQVMRL SELPSEEYKL LMDTRVIGIL SMLINILRRL KLIQMVSDRL RRDKIEKYAN LTHAMELKPY IEEPVFVAAK FDVTSLDFRP 0801: RIRHDFILSN RDAVDEYWLT LEYCYAASDH EAAKQAFPGS VSQEVFGVRS WASDHVMTAE QRAKLLQCID EKAKLSFKEC EKFAKDLNLT IEQVMHVYHA 0901: KHGRRVKSNS KDKNKAVENS PSSSKKRKRA SLVKTKGEGV KSIIVDGQKV LNSDAIDASN SESFQDSLQD DQTPIQMHRQ EHAEISNLTE DEPQCSNIIN 1001: RHASSKTRSL PSQRFTWTDE ADRKLLSKYA RHRAALGAKF HGVNWASVQE LPAPPLPCKR RIQTMMRNDK VRKAVMRLCN LLSERYAKHL KTESDSVEHR 1101: KDEGKWDDFN EKSISQAFNN VLELKKMGKL MPSQRTRPEI HTEDIQTVSI DQVKDTSRLH QIFKHVDEKD NGCIQVQESL VVSTAVELLK LVFLSMPTAP 1201: SMPNLLEDTL RRYSEGDLFT AYSYLRDKKF LVGGSDGQPF VLSQNFLHSI SKSPFPVNTG KRAAKFSSWL VEHERELMDE GVTLTSDLQC GDVLNFFSLV 1301: ASGELSLSVS LPEEGVGEPE HRRGLKRRAE DVEESELDSA KKFKLLGEGE INVRKEKGFP GLAVSVHRVT IPIANAIELF KDDDSWSGEL HFMSGETNNG 1401: CGSDDMKELL DSKDATVIPG SLVDSPWQAM ASVASCIMSG SAEEQQSLIS PEVFEAVSNA LHKAGDQGLS IEEVHFLINI PSQETCDCIV EVLQTFGVAL 1501: KVNGYDNFRL VHSLYRSKYF LTLADGGTTQ NGQQSQPANY VEKALEEHRS NDVVTSDYST SKDKQVHVSE NSVHKVTILN IPEMAETSGL QEESTKAPSV 1601: TFGTSIEGET KESTSVKSQP IFPWINADGS VNKVVFDGLV RRVLGTVMQN PGIPEEEIIN QMDVLNPQSC RKLLELMTLD GYMKVREMVQ TKFSGPPSLL 1701: TGLLFTGHRK TELISRKHFF ANSKGLFAL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)